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Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RXRA
wikigenes
PDBj
CellType: UPR9
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX014783
GSM468213: RXR ChIPseq UPR9 noZinc JM34
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
RXRA
Cell type
Cell type Class
Blood
Cell type
UPR9
NA
NA
Attributes by original data submitter
Sample
source_name
UPR9 cells
agent
none
antibody
RXR
Sequenced DNA Library
library_name
RXR_ChIPseq_UPR9_noZinc_JM34
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
12531143
Reads aligned (%)
89.8
Duplicates removed (%)
4.5
Number of peaks
676 (qval < 1E-05)
hg38
Number of total reads
12531143
Reads aligned (%)
91.7
Duplicates removed (%)
3.4
Number of peaks
419 (qval < 1E-05)
Base call quality data from
DBCLS SRA