SRX014783
GSM468213: RXR ChIPseq UPR9 noZinc JM34

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RXRA

Cell type

Cell type Class
Blood
Cell type
UPR9
NA
NA

Attributes by original data submitter

Sample

source_name
UPR9 cells
agent
none
antibody
RXR

Sequenced DNA Library

library_name
RXR_ChIPseq_UPR9_noZinc_JM34
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
12531143
Reads aligned (%)
89.8
Duplicates removed (%)
4.5
Number of peaks
676 (qval < 1E-05)

hg38

Number of total reads
12531143
Reads aligned (%)
91.7
Duplicates removed (%)
3.4
Number of peaks
419 (qval < 1E-05)

Base call quality data from DBCLS SRA