SRX014781
GSM468211: RAR ChIPseq UPR9 noZinc JM32

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RARA

Cell type

Cell type Class
Blood
Cell type
UPR9
NA
NA

Attributes by original data submitter

Sample

source_name
UPR9 cells
agent
none
antibody
RAR

Sequenced DNA Library

library_name
RAR_ChIPseq_UPR9_noZinc_JM32
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10579706
Reads aligned (%)
92.8
Duplicates removed (%)
6.5
Number of peaks
270 (qval < 1E-05)

hg19

Number of total reads
10579706
Reads aligned (%)
92.2
Duplicates removed (%)
7.0
Number of peaks
467 (qval < 1E-05)

Base call quality data from DBCLS SRA