SRX014780
GSM468210: PML ChIPseq UPR9 5hrZinc JM31

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PML

Cell type

Cell type Class
Blood
Cell type
UPR9
NA
NA

Attributes by original data submitter

Sample

source_name
UPR9 cells
agent
5 hours zinc
antibody
PML

Sequenced DNA Library

library_name
PML_ChIPseq_UPR9_5hrZinc_JM31
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12212366
Reads aligned (%)
92.7
Duplicates removed (%)
6.0
Number of peaks
6559 (qval < 1E-05)

hg19

Number of total reads
12212366
Reads aligned (%)
91.9
Duplicates removed (%)
6.9
Number of peaks
6624 (qval < 1E-05)

Base call quality data from DBCLS SRA