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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: PML
wikigenes
PDBj
CellType: UPR9
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX014780
GSM468210: PML ChIPseq UPR9 5hrZinc JM31
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
PML
Cell type
Cell type Class
Blood
Cell type
UPR9
NA
NA
Attributes by original data submitter
Sample
source_name
UPR9 cells
agent
5 hours zinc
antibody
PML
Sequenced DNA Library
library_name
PML_ChIPseq_UPR9_5hrZinc_JM31
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
12212366
Reads aligned (%)
92.7
Duplicates removed (%)
6.0
Number of peaks
6559 (qval < 1E-05)
hg19
Number of total reads
12212366
Reads aligned (%)
91.9
Duplicates removed (%)
6.9
Number of peaks
6624 (qval < 1E-05)
Base call quality data from
DBCLS SRA