SRX014776
GSM468206: PML ChIP-seq MR4 24hoursATRA JM27

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PML

Cell type

Cell type Class
Blood
Cell type
MR4
NA
NA

Attributes by original data submitter

Sample

source_name
MR4 cells
agent
24 hours ATRA
antibody
PML

Sequenced DNA Library

library_name
PML_ChIP-seq_MR4_24hoursATRA_JM27
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13771907
Reads aligned (%)
84.2
Duplicates removed (%)
23.9
Number of peaks
2814 (qval < 1E-05)

hg19

Number of total reads
13771907
Reads aligned (%)
83.8
Duplicates removed (%)
24.4
Number of peaks
2932 (qval < 1E-05)

Base call quality data from DBCLS SRA