SRX014772
GSM468202: H3K9me3 ChIPseq NB4 24hrATRA JM23

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
NB4 cells
agent
24 hours ATRA
antibody
H3K9me3

Sequenced DNA Library

library_name
H3K9me3_ChIPseq_NB4_24hrATRA_JM23
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15652347
Reads aligned (%)
94.8
Duplicates removed (%)
17.4
Number of peaks
2253 (qval < 1E-05)

hg19

Number of total reads
15652347
Reads aligned (%)
94.3
Duplicates removed (%)
17.9
Number of peaks
2354 (qval < 1E-05)

Base call quality data from DBCLS SRA