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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RARA
wikigenes
PDBj
CellType: NB-4
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX014770
GSM468200: RAR ChIPseq NB4 24hoursATRA JM21
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
RARA
Cell type
Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia
Attributes by original data submitter
Sample
source_name
NB4 cells
agent
24 hours ATRA
antibody
RAR
Sequenced DNA Library
library_name
RAR_ChIPseq_NB4_24hoursATRA_JM21
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
14403159
Reads aligned (%)
71.4
Duplicates removed (%)
31.8
Number of peaks
234 (qval < 1E-05)
hg19
Number of total reads
14403159
Reads aligned (%)
71.1
Duplicates removed (%)
32.3
Number of peaks
217 (qval < 1E-05)
Base call quality data from
DBCLS SRA