Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RARA

Cell type

Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
NB4 cells
agent
24 hours ATRA
antibody
RAR

Sequenced DNA Library

library_name
RAR_ChIPseq_NB4_24hoursATRA_JM21
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
14403159
Reads aligned (%)
48.2
Duplicates removed (%)
32.3
Number of peaks
217 (qval < 1E-05)

hg38

Number of total reads
14403159
Reads aligned (%)
48.7
Duplicates removed (%)
31.8
Number of peaks
234 (qval < 1E-05)

Base call quality data from DBCLS SRA