SRX014769
GSM468199: RXR ChIP-seq NB4 24hoursATRA JM20

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RXRA

Cell type

Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
NB4 cells
agent
24 hours ATRA
antibody
RXR

Sequenced DNA Library

library_name
RXR_ChIP-seq_NB4_24hoursATRA_JM20
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
5011382
Reads aligned (%)
85.9
Duplicates removed (%)
4.9
Number of peaks
177 (qval < 1E-05)

hg38

Number of total reads
5011382
Reads aligned (%)
87.5
Duplicates removed (%)
4.1
Number of peaks
157 (qval < 1E-05)

Base call quality data from DBCLS SRA