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Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RXRA
wikigenes
PDBj
CellType: NB-4
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX014769
GSM468199: RXR ChIP-seq NB4 24hoursATRA JM20
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
RXRA
Cell type
Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia
Attributes by original data submitter
Sample
source_name
NB4 cells
agent
24 hours ATRA
antibody
RXR
Sequenced DNA Library
library_name
RXR_ChIP-seq_NB4_24hoursATRA_JM20
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
5011382
Reads aligned (%)
85.9
Duplicates removed (%)
4.9
Number of peaks
177 (qval < 1E-05)
hg38
Number of total reads
5011382
Reads aligned (%)
87.5
Duplicates removed (%)
4.1
Number of peaks
157 (qval < 1E-05)
Base call quality data from
DBCLS SRA