SRX014767
GSM468197: DNAme MeCap-seq NB4 48hoursATRA JM18

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MethylCap

Cell type

Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
NB4 cells
agent
48 hours ATRA
antibody
MethylCap GST MBD

Sequenced DNA Library

library_name
DNAme_MeCap-seq_NB4_48hoursATRA_JM18
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28609298
Reads aligned (%)
96.9
Duplicates removed (%)
13.3
Number of peaks
84580 (qval < 1E-05)

hg19

Number of total reads
28609298
Reads aligned (%)
95.5
Duplicates removed (%)
15.2
Number of peaks
84254 (qval < 1E-05)

Base call quality data from DBCLS SRA