SRX014766
GSM468196: DNAme MeCap-seq NB4 noATRA JM17

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MethylCap

Cell type

Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
NB4 cells
agent
none
antibody
MethylCap GST MBD

Sequenced DNA Library

library_name
DNAme_MeCap-seq_NB4_noATRA_JM17
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30172269
Reads aligned (%)
96.6
Duplicates removed (%)
11.5
Number of peaks
64414 (qval < 1E-05)

hg19

Number of total reads
30172269
Reads aligned (%)
94.8
Duplicates removed (%)
13.8
Number of peaks
64048 (qval < 1E-05)

Base call quality data from DBCLS SRA