SRX014761
GSM468191: RNApolII ChIP-seq NB4 48hoursATRA JM12

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
NB4 cells
agent
48 hours ATRA
antibody
RNAPII

Sequenced DNA Library

library_name
RNApolII_ChIP-seq_NB4_48hoursATRA_JM12
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9112104
Reads aligned (%)
90.5
Duplicates removed (%)
7.0
Number of peaks
4895 (qval < 1E-05)

hg19

Number of total reads
9112104
Reads aligned (%)
89.5
Duplicates removed (%)
8.1
Number of peaks
4981 (qval < 1E-05)

Base call quality data from DBCLS SRA