SRX014760
GSM468190: RNApolII ChIP-seq NB4 24hoursATRA JM11

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
NB4 cells
agent
24 hours ATRA
antibody
RNAPII

Sequenced DNA Library

library_name
RNApolII_ChIP-seq_NB4_24hoursATRA_JM11
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
8496838
Reads aligned (%)
90.0
Duplicates removed (%)
5.4
Number of peaks
6315 (qval < 1E-05)

hg19

Number of total reads
8496838
Reads aligned (%)
89.1
Duplicates removed (%)
6.3
Number of peaks
6453 (qval < 1E-05)

Base call quality data from DBCLS SRA