SRX014752
GSM468182: RAR ChIP-seq NB4 noATRA, JM3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RARA

Cell type

Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
NB4 cells
agent
none
antibody
RAR

Sequenced DNA Library

library_name
RAR_ChIP-seq_NB4_noATRA, JM3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
6860325
Reads aligned (%)
88.8
Duplicates removed (%)
27.2
Number of peaks
3713 (qval < 1E-05)

hg19

Number of total reads
6860325
Reads aligned (%)
88.3
Duplicates removed (%)
27.6
Number of peaks
3751 (qval < 1E-05)

Base call quality data from DBCLS SRA