SRX014751
GSM468181: RXR ChIP-seq NB4 noATRA, JM2a and JM2b

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RXRA

Cell type

Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
NB4 cells
agent
none
antibody
RXR

Sequenced DNA Library

library_name
RXR_ChIP-seq_NB4_noATRA, JM2a and JM2b
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
17872572
Reads aligned (%)
78.9
Duplicates removed (%)
10.7
Number of peaks
1716 (qval < 1E-05)

hg38

Number of total reads
17872572
Reads aligned (%)
79.7
Duplicates removed (%)
9.3
Number of peaks
1448 (qval < 1E-05)

Base call quality data from DBCLS SRA