SRX014750
GSM468180: PML ChIP-seq NB4 noATRA, JM1a and JM1b

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PML

Cell type

Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
NB4 cells
agent
none
antibody
PML

Sequenced DNA Library

library_name
PML_ChIP-seq_NB4_noATRA, JM1a and JM1b
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15876739
Reads aligned (%)
84.9
Duplicates removed (%)
9.5
Number of peaks
942 (qval < 1E-05)

hg19

Number of total reads
15876739
Reads aligned (%)
84.0
Duplicates removed (%)
10.9
Number of peaks
1258 (qval < 1E-05)

Base call quality data from DBCLS SRA