SRX014508
ChIP-Seq analysis ofH3K4me1 in human CD34 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD34+
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
none
BIOMATERIAL_PROVIDER
FHCRC
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD34 Primary Cells
MARKERS
CD34
DONOR_ID
CD34_39889
DONOR_AGE
NA
DONOR_HEALTH_STATUS
none
DONOR_SEX
Unknown
DONOR_ETHNICITY
NA
PASSAGE_IF_EXPANDED
NA
sample_term_id
CL_0001059

Sequenced DNA Library

library_name
Solexa-11487
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
23387826
Reads aligned (%)
80.3
Duplicates removed (%)
46.9
Number of peaks
6291 (qval < 1E-05)

hg19

Number of total reads
23387826
Reads aligned (%)
79.9
Duplicates removed (%)
47.2
Number of peaks
6294 (qval < 1E-05)

Base call quality data from DBCLS SRA