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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: 2nd instar
ATCC
MeSH
RIKEN BRC
SRX013114
GSM451800: L2 INPUT (2)
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Larvae
Cell type
2nd instar
NA
NA
Attributes by original data submitter
Sample
source_name
L2
development stage
L2
reference
INPUT
Sequenced DNA Library
library_name
L2_INPUT (2)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
2501288
Reads aligned (%)
69.3
Duplicates removed (%)
7.8
Number of peaks
143 (qval < 1E-05)
dm3
Number of total reads
2501288
Reads aligned (%)
69.8
Duplicates removed (%)
5.9
Number of peaks
573 (qval < 1E-05)
Base call quality data from
DBCLS SRA