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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RNA polymerase II
wikigenes
PDBj
CellType: 8-12h embryos
ATCC
MeSH
RIKEN BRC
SRX013077
GSM432594: E8-12 PolII ChIPSeq 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
RNA polymerase
Antigen
RNA polymerase II
Cell type
Cell type Class
Embryo
Cell type
8-12h embryos
NA
NA
Attributes by original data submitter
Sample
source_name
E8-12
development point
E8-12
antibody
PolII
antibody manufacturer
Covance
antibody catalog number
MMS-126R
antibody lot number
14861301
Sequenced DNA Library
library_name
E8-12_PolII_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
7724621
Reads aligned (%)
89.8
Duplicates removed (%)
12.6
Number of peaks
755 (qval < 1E-05)
dm3
Number of total reads
7724621
Reads aligned (%)
90.3
Duplicates removed (%)
10.5
Number of peaks
591 (qval < 1E-05)
Base call quality data from
DBCLS SRA