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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me1
wikigenes
PDBj
CellType: 12-16h embryos
ATCC
MeSH
RIKEN BRC
SRX013074
GSM432591: E12-16 H3K4Me1 ChIPSeq 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me1
Cell type
Cell type Class
Embryo
Cell type
12-16h embryos
NA
NA
Attributes by original data submitter
Sample
source_name
E12-16
development point
E12-16
antibody
H3K4me1
antibody manufacturer
Abcam
antibody catalog number
ab8895
antibody lot number
349232
Sequenced DNA Library
library_name
E12-16_H3K4Me1_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
6873870
Reads aligned (%)
91.7
Duplicates removed (%)
4.7
Number of peaks
5580 (qval < 1E-05)
dm3
Number of total reads
6873870
Reads aligned (%)
92.0
Duplicates removed (%)
4.1
Number of peaks
5655 (qval < 1E-05)
Base call quality data from
DBCLS SRA