SRX013073
GSM432590: E16-20 PolII ChIPSeq 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Embryo
Cell type
16-20h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E16-20
development point
E16-20
antibody
PolII
antibody manufacturer
Covance
antibody catalog number
MMS-126R
antibody lot number
14861301

Sequenced DNA Library

library_name
E16-20_PolII_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
4113133
Reads aligned (%)
91.3
Duplicates removed (%)
8.0
Number of peaks
3017 (qval < 1E-05)

dm3

Number of total reads
4113133
Reads aligned (%)
91.5
Duplicates removed (%)
7.7
Number of peaks
3062 (qval < 1E-05)

Base call quality data from DBCLS SRA