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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me1
wikigenes
PDBj
CellType: 1st instar
ATCC
MeSH
RIKEN BRC
SRX013071
GSM432588: L1 H3K4Me1 ChIPSeq 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me1
Cell type
Cell type Class
Larvae
Cell type
1st instar
NA
NA
Attributes by original data submitter
Sample
source_name
L1
development point
L1
antibody
H3K4me1
antibody manufacturer
Abcam
antibody catalog number
ab8895
antibody lot number
349232
Sequenced DNA Library
library_name
L1_H3K4Me1_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
2924397
Reads aligned (%)
78.4
Duplicates removed (%)
3.4
Number of peaks
209 (qval < 1E-05)
dm3
Number of total reads
2924397
Reads aligned (%)
78.8
Duplicates removed (%)
2.9
Number of peaks
0 (qval < 1E-05)
Base call quality data from
DBCLS SRA