SRX013063
GSM432580: E12-16 H3K4Me3 ChIPSeq 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Embryo
Cell type
12-16h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E12-16
development point
E12-16
antibody
H3K4me3
antibody manufacturer
Abcam
antibody catalog number
ab8580
antibody lot number
411277

Sequenced DNA Library

library_name
E12-16_H3K4Me3_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
6861895
Reads aligned (%)
88.0
Duplicates removed (%)
21.0
Number of peaks
7237 (qval < 1E-05)

dm3

Number of total reads
6861895
Reads aligned (%)
88.3
Duplicates removed (%)
20.3
Number of peaks
7519 (qval < 1E-05)

Base call quality data from DBCLS SRA