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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: Pupae
ATCC
MeSH
RIKEN BRC
SRX013060
GSM408995: Pupae INPUT CBP
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Pupae
Cell type
Pupae
NA
NA
Attributes by original data submitter
Sample
source_name
Pupae
tissue/development stage
Pupae
reference
INPUT
Sequenced DNA Library
library_name
Pupae_INPUT_CBP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
2503024
Reads aligned (%)
80.2
Duplicates removed (%)
4.5
Number of peaks
163 (qval < 1E-05)
dm3
Number of total reads
2503024
Reads aligned (%)
80.7
Duplicates removed (%)
3.0
Number of peaks
404 (qval < 1E-05)
Base call quality data from
DBCLS SRA