SRX013030
GSM401408: E0-4 H3K9Ac ChIPSeq 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9ac

Cell type

Cell type Class
Embryo
Cell type
0-4h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E0-4
tissue
Embryos
time point
0-4h
antibody
H3K9Ac
antibody manufacturer
Abcam
antibody catalog number
ab4441
antibody lot number
420772

Sequenced DNA Library

library_name
E0-4_H3K9Ac_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
4769560
Reads aligned (%)
81.3
Duplicates removed (%)
24.7
Number of peaks
4953 (qval < 1E-05)

dm3

Number of total reads
4769560
Reads aligned (%)
81.5
Duplicates removed (%)
24.3
Number of peaks
4923 (qval < 1E-05)

Base call quality data from DBCLS SRA