SRX013028
GSM401406: E4-8 H3K4Me1 ChIPSeq 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Embryo
Cell type
4-8h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E4-8
tissue
Embryos
time point
4-8h
antibody
H3K4me1
antibody manufacturer
Abcam
antibody catalog number
ab8895
antibody lot number
349232

Sequenced DNA Library

library_name
E4-8_H3K4Me1_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
6923752
Reads aligned (%)
86.4
Duplicates removed (%)
18.4
Number of peaks
1286 (qval < 1E-05)

dm3

Number of total reads
6923752
Reads aligned (%)
86.6
Duplicates removed (%)
17.5
Number of peaks
1379 (qval < 1E-05)

Base call quality data from DBCLS SRA