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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me1
wikigenes
PDBj
CellType: 16-20h embryos
ATCC
MeSH
RIKEN BRC
SRX013025
GSM401403: E16-20 H3K4Me1 ChIPSeq 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me1
Cell type
Cell type Class
Embryo
Cell type
16-20h embryos
NA
NA
Attributes by original data submitter
Sample
source_name
E16-20
tissue
Embryos
time point
16-20h
antibody
H3K4me1
antibody manufacturer
Abcam
antibody catalog number
ab8895
antibody lot number
349232
Sequenced DNA Library
library_name
E16-20_H3K4Me1_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
6986464
Reads aligned (%)
97.2
Duplicates removed (%)
6.8
Number of peaks
8858 (qval < 1E-05)
dm3
Number of total reads
6986464
Reads aligned (%)
97.3
Duplicates removed (%)
6.4
Number of peaks
8968 (qval < 1E-05)
Base call quality data from
DBCLS SRA