Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Embryo
Cell type
4-8h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E4-8
tissue
Embryos
time point
4-8h
antibody
H3K4me3
antibody manufacturer
Abcam
antibody catalog number
ab8580
antibody lot number
411277

Sequenced DNA Library

library_name
E4-8_H3K4Me3_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

dm6

Number of total reads
7437147
Reads aligned (%)
58.0
Duplicates removed (%)
23.3
Number of peaks
6064 (qval < 1E-05)

dm3

Number of total reads
7437147
Reads aligned (%)
58.2
Duplicates removed (%)
22.6
Number of peaks
6354 (qval < 1E-05)

Base call quality data from DBCLS SRA