ChIP-Atlas: SRX013004

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Unclassified
Antigen: Unclassified

Cell type

Cell type Class: Embryo
Cell type: 0-4h embryos
NA: NA

Attributes by original data submitter

Sample

source_name: E0-4
tissue: Embryos
time point: 0-4h
reference: input

Sequenced DNA Library

library_name: E0-4_INPUT
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads: 3270113
Reads aligned (%): 50.4
Duplicates removed (%): 20.4
Number of peaks: 498 (qval < 1E-05)

dm3

Number of total reads: 3270113
Reads aligned (%): 51.0
Duplicates removed (%): 19.2
Number of peaks: 0 (qval < 1E-05)

Base call quality data from DBCLS SRA