Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Embryo
Cell type
0-4h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E0-4
tissue
Embryos
time point
0-4h
antibody
H3K4me3
antibody manufacturer
Abcam
antibody catalog number
ab8580
antibody lot number
411277

Sequenced DNA Library

library_name
E0-4_H3K4Me3_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

dm6

Number of total reads
4561704
Reads aligned (%)
61.7
Duplicates removed (%)
14.4
Number of peaks
5727 (qval < 1E-05)

dm3

Number of total reads
4561704
Reads aligned (%)
61.9
Duplicates removed (%)
13.9
Number of peaks
5818 (qval < 1E-05)

Base call quality data from DBCLS SRA