SRX012401
GSM417829: HS CD4 Act 18h Pol II

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T cells
antigen
Pol II
antibody
ab5408

Sequenced DNA Library

library_name
HS_CD4_Act_18h_ Pol II
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18485260
Reads aligned (%)
58.3
Duplicates removed (%)
4.8
Number of peaks
13818 (qval < 1E-05)

hg19

Number of total reads
18485260
Reads aligned (%)
57.9
Duplicates removed (%)
5.5
Number of peaks
13755 (qval < 1E-05)

Base call quality data from DBCLS SRA