SRX012395
GSM417823: HS CD4 Act 18h H3K9me1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me1

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T cells
antigen
H3K9me1
antibody
ab8896

Sequenced DNA Library

library_name
HS_CD4_Act_18h_ H3K9me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13231514
Reads aligned (%)
65.3
Duplicates removed (%)
10.9
Number of peaks
240 (qval < 1E-05)

hg19

Number of total reads
13231514
Reads aligned (%)
65.1
Duplicates removed (%)
11.0
Number of peaks
254 (qval < 1E-05)

Base call quality data from DBCLS SRA