SRX012393
GSM417821: HS CD4 Act 18h H3K4me1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T cells
antigen
H3K4me1
antibody
ab8895

Sequenced DNA Library

library_name
HS_CD4_Act_18h_ H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9645891
Reads aligned (%)
41.1
Duplicates removed (%)
2.6
Number of peaks
51 (qval < 1E-05)

hg19

Number of total reads
9645891
Reads aligned (%)
40.8
Duplicates removed (%)
2.8
Number of peaks
40 (qval < 1E-05)

Base call quality data from DBCLS SRA