Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NANOG

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells
cell line
H1
chip antibody
NANOG

Sequenced DNA Library

library_name
hESC-NANOG-1b
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
12625367
Reads aligned (%)
24.9
Duplicates removed (%)
36.4
Number of peaks
9521 (qval < 1E-05)

hg38

Number of total reads
12625367
Reads aligned (%)
25.2
Duplicates removed (%)
36.1
Number of peaks
9486 (qval < 1E-05)

Base call quality data from DBCLS SRA