Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SOX2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells
cell line
H1
chip antibody
SOX2

Sequenced DNA Library

library_name
hESC-SOX2-1a
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
9017771
Reads aligned (%)
47.0
Duplicates removed (%)
18.2
Number of peaks
3693 (qval < 1E-05)

hg38

Number of total reads
9017771
Reads aligned (%)
47.3
Duplicates removed (%)
18.0
Number of peaks
3653 (qval < 1E-05)

Base call quality data from DBCLS SRA