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Install and launch IGV before selecting data to visualize
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: L3
ATCC
MeSH
RIKEN BRC
SRX005640
no title
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Larvae
Cell type
L3
NA
NA
Attributes by original data submitter
Sample
chip antibody
none, input DNA
genotype
mab-5 transgenic
growth stage
L3
strain
OP26
Sequenced DNA Library
library_name
MAB-5 L3 replicate 2 Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
4001586
Reads aligned (%)
54.7
Duplicates removed (%)
3.9
Number of peaks
148 (qval < 1E-05)
ce10
Number of total reads
4001586
Reads aligned (%)
54.7
Duplicates removed (%)
3.9
Number of peaks
149 (qval < 1E-05)
Base call quality data from
DBCLS SRA