Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: mab-5
wikigenes
PDBj
CellType: L3
ATCC
MeSH
RIKEN BRC
SRX005637
no title
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
mab-5
Cell type
Cell type Class
Larvae
Cell type
L3
NA
NA
Attributes by original data submitter
Sample
chip antibody
anti-GFP to MAB-5
genotype
mab-5 transgenic
growth stage
L3
strain
OP26
Sequenced DNA Library
library_name
MAB-5 L3 replicate 1 GFP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
2245066
Reads aligned (%)
65.5
Duplicates removed (%)
44.6
Number of peaks
1185 (qval < 1E-05)
ce10
Number of total reads
2245066
Reads aligned (%)
65.4
Duplicates removed (%)
44.6
Number of peaks
1185 (qval < 1E-05)
Base call quality data from
DBCLS SRA