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Install and launch IGV before selecting data to visualize
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ama-1
wikigenes
PDBj
CellType: Young adult
ATCC
MeSH
RIKEN BRC
SRX005625
no title
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
ama-1
Cell type
Cell type Class
Adult
Cell type
Young adult
NA
NA
Attributes by original data submitter
Sample
chip antibody
anti-GFP to AMA-1
genotype
ama-1 transgenic
growth stage
L4/young adult
strain
OP34
Sequenced DNA Library
library_name
ama-1 L4/young adult replicate 1 GFP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
ce10
Number of total reads
5707229
Reads aligned (%)
42.5
Duplicates removed (%)
32.0
Number of peaks
1612 (qval < 1E-05)
ce11
Number of total reads
5707229
Reads aligned (%)
42.5
Duplicates removed (%)
32.0
Number of peaks
1611 (qval < 1E-05)
Base call quality data from
DBCLS SRA