SRX005625
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ama-1

Cell type

Cell type Class
Adult
Cell type
Young adult
NA
NA

Attributes by original data submitter

Sample

chip antibody
anti-GFP to AMA-1
genotype
ama-1 transgenic
growth stage
L4/young adult
strain
OP34

Sequenced DNA Library

library_name
ama-1 L4/young adult replicate 1 GFP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

ce10

Number of total reads
5707229
Reads aligned (%)
42.5
Duplicates removed (%)
32.0
Number of peaks
1612 (qval < 1E-05)

ce11

Number of total reads
5707229
Reads aligned (%)
42.5
Duplicates removed (%)
32.0
Number of peaks
1611 (qval < 1E-05)

Base call quality data from DBCLS SRA