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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K36me3
wikigenes
PDBj
CellType: CD36+
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX005157
no title
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K36me3
Cell type
Cell type Class
Blood
Cell type
CD36+
NA
NA
Attributes by original data submitter
Sample
cell type
CD36+ primary hematopoietic stem cells/progenitor cells (HSCs/HPCs)cells
chip antibody
H3K36me3
Sequenced DNA Library
library_name
CD36-H3K36me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
27216304
Reads aligned (%)
49.0
Duplicates removed (%)
16.5
Number of peaks
919 (qval < 1E-05)
hg19
Number of total reads
27216304
Reads aligned (%)
48.8
Duplicates removed (%)
16.7
Number of peaks
915 (qval < 1E-05)
Base call quality data from
DBCLS SRA