SRX003940
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

cell line
MCF-7
chip antibody
ERalpha
treatment
Fulvestrant 100 nM

Sequenced DNA Library

library_name
ERalpha Fulv
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
8302024
Reads aligned (%)
92.6
Duplicates removed (%)
13.4
Number of peaks
3805 (qval < 1E-05)

hg19

Number of total reads
8302024
Reads aligned (%)
91.7
Duplicates removed (%)
14.5
Number of peaks
4002 (qval < 1E-05)

Base call quality data from DBCLS SRA