SRX003938
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

cell line
MCF-7
chip antibody
ERalpha
treatment
E2 10 nM 1h

Sequenced DNA Library

library_name
ERalpha E2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
12652745
Reads aligned (%)
92.4
Duplicates removed (%)
25.1
Number of peaks
10479 (qval < 1E-05)

hg38

Number of total reads
12652745
Reads aligned (%)
93.0
Duplicates removed (%)
24.5
Number of peaks
10395 (qval < 1E-05)

Base call quality data from DBCLS SRA