SRX003873
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

cell line
v6.5
cell type
embryonic stem cell
chip antibody
none, whole cell extract

Sequenced DNA Library

library_name
WCE_mES_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
6514677
Reads aligned (%)
67.9
Duplicates removed (%)
5.5
Number of peaks
159 (qval < 1E-05)

mm9

Number of total reads
6514677
Reads aligned (%)
67.8
Duplicates removed (%)
6.0
Number of peaks
172 (qval < 1E-05)

Base call quality data from DBCLS SRA