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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RNF2
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX003846
no title
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
RNF2
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
cell type
Embyonic stem cells
chip antibody
RING1B
line
H9 (passage 45)
Sequenced DNA Library
library_name
hES_RING1B_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
13963444
Reads aligned (%)
64.9
Duplicates removed (%)
64.8
Number of peaks
143 (qval < 1E-05)
hg19
Number of total reads
13963444
Reads aligned (%)
64.3
Duplicates removed (%)
66.3
Number of peaks
157 (qval < 1E-05)
Base call quality data from
DBCLS SRA