SRX003799
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
STAT1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

cell line
HeLa S3 (ATCC/Snyder Lab)
chip antibody
STAT1
growth properties
Suspension
morphology
epithelial
treatment
IFN gamma

Sequenced DNA Library

library_name
IFN_gamma_STAT1_ChIP-Seq in HeLa S3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
38321554
Reads aligned (%)
60.8
Duplicates removed (%)
5.3
Number of peaks
26053 (qval < 1E-05)

hg19

Number of total reads
38321554
Reads aligned (%)
60.5
Duplicates removed (%)
5.7
Number of peaks
26075 (qval < 1E-05)

Base call quality data from DBCLS SRA