SRX003798
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
Jurkat
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

cell line
Jurkat
chip antibody
CTCF

Sequenced DNA Library

library_name
Jurkat CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10556009
Reads aligned (%)
42.4
Duplicates removed (%)
8.3
Number of peaks
5480 (qval < 1E-05)

hg19

Number of total reads
10556009
Reads aligned (%)
41.8
Duplicates removed (%)
8.5
Number of peaks
5418 (qval < 1E-05)

Base call quality data from DBCLS SRA