Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

cell line
HeLa
chip antibody
CTCF

Sequenced DNA Library

library_name
HeLa CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
9598905
Reads aligned (%)
28.1
Duplicates removed (%)
6.9
Number of peaks
4054 (qval < 1E-05)

hg38

Number of total reads
9598905
Reads aligned (%)
28.5
Duplicates removed (%)
6.6
Number of peaks
4051 (qval < 1E-05)

Base call quality data from DBCLS SRA