SRX003322
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
STAT1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

cell line
HeLa S3
chip antibody
STAT1
treatment
IFNgamma stimulated

Sequenced DNA Library

library_name
HeLa S3 STAT1 ChIP IFNgamma_6
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
5615004
Reads aligned (%)
54.0
Duplicates removed (%)
3.0
Number of peaks
2419 (qval < 1E-05)

hg19

Number of total reads
5615004
Reads aligned (%)
53.8
Duplicates removed (%)
3.3
Number of peaks
2422 (qval < 1E-05)

Base call quality data from DBCLS SRA