Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
CD34+
NA
NA

Attributes by original data submitter

Sample

ENA first public
2017-01-22
ENA last update
2015-01-28
ENA-CHECKLIST
ERC000011
External Id
SAMEA3226091
INSDC center alias
Paul O'Gorman Leukaemia Research Centre
INSDC center name
Paul O'Gorman Leukaemia Research Centre
INSDC first public
2017-01-22T17:02:13Z
INSDC last update
2015-01-28T16:53:59Z
INSDC status
public
Submitter Id
LSC3 H3K4me1
cell type
CD34+CD38-
common name
human
modification
H3K4me3 ChIP
sample
CML3
sample name
LSC3 H3K4me1

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
28702247
Reads aligned (%)
55.0
Duplicates removed (%)
16.9
Number of peaks
12630 (qval < 1E-05)

hg19

Number of total reads
28702247
Reads aligned (%)
54.6
Duplicates removed (%)
17.7
Number of peaks
12580 (qval < 1E-05)

Base call quality data from DBCLS SRA