ERX690606
Illumina Genome Analyzer II sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
CD34+
NA
NA

Attributes by original data submitter

Sample

ENA first public
2017-01-22
ENA last update
2015-01-28
ENA-CHECKLIST
ERC000011
External Id
SAMEA3226079
INSDC center alias
Paul O'Gorman Leukaemia Research Centre
INSDC center name
Paul O'Gorman Leukaemia Research Centre
INSDC first public
2017-01-22T17:02:13Z
INSDC last update
2015-01-28T16:53:59Z
INSDC status
public
Submitter Id
LPC2 H3K4me3
cell type
CD34+CD38+
common name
human
modification
H3K4me3 ChIP
sample
CML2
sample name
LPC2 H3K4me3

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33549637
Reads aligned (%)
40.0
Duplicates removed (%)
10.1
Number of peaks
17414 (qval < 1E-05)

hg19

Number of total reads
33549637
Reads aligned (%)
39.9
Duplicates removed (%)
10.4
Number of peaks
17451 (qval < 1E-05)

Base call quality data from DBCLS SRA