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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Unclassified
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX639983
Illumina HiSeq 2000 sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Unclassified
Cell type
Unclassified
NA
NA
Attributes by original data submitter
Sample
Alias
778 ChIPseq input
Description
778 ChIPseq input data
ENA checklist
ERC000011
INSDC center alias
WEHI
INSDC center name
Walter and Eliza Hall Institute
INSDC first public
2014-12-07T17:01:20Z
INSDC last update
2014-12-07T10:08:13Z
INSDC status
public
SRA accession
ERS624887
Sample Name
ERS624887
Title
778 ChIPseq input
Sequenced DNA Library
library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
42904754
Reads aligned (%)
97.3
Duplicates removed (%)
8.7
Number of peaks
373 (qval < 1E-05)
hg19
Number of total reads
42904754
Reads aligned (%)
96.5
Duplicates removed (%)
9.9
Number of peaks
362 (qval < 1E-05)
Base call quality data from
DBCLS SRA