ERX631826
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
E14 ESC
ArrayExpress-DevelopmentalStage
Embryonic Stem cells
ArrayExpress-Genotype
Wildtype
ArrayExpress-Immunoprecipitate
H3k122
ArrayExpress-Sex
female
ArrayExpress-Species
Mus Musculus
ENA first public
2014-11-18
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2665112
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2014-11-18T09:33:13Z
INSDC last update
2018-03-08T19:54:27Z
INSDC status
public
Submitter Id
H3K122_serum-sc-2036894
common name
house mouse
sample description
DNA from ES cells
sample name
H3K122_serum-sc-2036894

Sequenced DNA Library

library_name
11111519
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
7950775
Reads aligned (%)
95.2
Duplicates removed (%)
9.0
Number of peaks
5679 (qval < 1E-05)

mm9

Number of total reads
7950775
Reads aligned (%)
95.1
Duplicates removed (%)
9.2
Number of peaks
5778 (qval < 1E-05)

Base call quality data from DBCLS SRA