Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Liver
Cell type
Hepatocellular carcinoma
NA
NA

Attributes by original data submitter

Sample

DISEASE_ONTOLOGY_URI
C0019204
ENA first public
2016-02-11
ENA last update
2019-05-20
ENA-CHECKLIST
ERC000011
External Id
SAMEA2810230
INSDC center alias
DKFZ
INSDC center name
German Cancer Research Center (DKFZ), Heidelberg, Germany
INSDC first public
2016-02-11T17:01:49Z
INSDC last update
2019-05-20T15:38:07Z
INSDC status
public
SAMPLE_ONTOLOGY_URI
http://purl.obolibrary.org/obo/UBERON_0002107
Submitter Id
01_HepG2_LiHG_Ct2
VALIDATED_AGAINST_METADATA_SPEC
1.0/SAMPLE
biomaterial provider
ATCC
biomaterial type
Cell Line
common name
human
differentiation stage
undifferentiated
disease
Hepatocellular carcinoma
line
HepG2
medium
DMEM + 10% FCS + 1% Pen/Strep
passage
15
sample name
01_HepG2_LiHG_Ct2
sex
male

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
48493595
Reads aligned (%)
95.9
Duplicates removed (%)
4.2
Number of peaks
5572 (qval < 1E-05)

hg19

Number of total reads
48493595
Reads aligned (%)
92.2
Duplicates removed (%)
5.2
Number of peaks
4033 (qval < 1E-05)

Base call quality data from DBCLS SRA