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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Hepatocellular carcinoma
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX607025
Illumina HiSeq 2500 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Liver
Cell type
Hepatocellular carcinoma
NA
NA
Attributes by original data submitter
Sample
DISEASE_ONTOLOGY_URI
C0019204
ENA first public
2016-02-11
ENA last update
2019-05-20
ENA-CHECKLIST
ERC000011
External Id
SAMEA2810230
INSDC center alias
DKFZ
INSDC center name
German Cancer Research Center (DKFZ), Heidelberg, Germany
INSDC first public
2016-02-11T17:01:49Z
INSDC last update
2019-05-20T15:38:07Z
INSDC status
public
SAMPLE_ONTOLOGY_URI
http://purl.obolibrary.org/obo/UBERON_0002107
Submitter Id
01_HepG2_LiHG_Ct2
VALIDATED_AGAINST_METADATA_SPEC
1.0/SAMPLE
biomaterial provider
ATCC
biomaterial type
Cell Line
common name
human
differentiation stage
undifferentiated
disease
Hepatocellular carcinoma
line
HepG2
medium
DMEM + 10% FCS + 1% Pen/Strep
passage
15
sample name
01_HepG2_LiHG_Ct2
sex
male
Sequenced DNA Library
library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
48493595
Reads aligned (%)
95.9
Duplicates removed (%)
4.2
Number of peaks
5572 (qval < 1E-05)
hg19
Number of total reads
48493595
Reads aligned (%)
92.2
Duplicates removed (%)
5.2
Number of peaks
4033 (qval < 1E-05)
Base call quality data from
DBCLS SRA